Running the NGS pipeline on silverback.ucsd.edu
Familiarity with basic Linux command line is assumed
In order to make use of the NGS pipeline for HIV data on silverback.ucsd.edu one first needs to obtain an account on silverback.ucsd.edu
All of the scripts and support files for the pipeline reside in /opt/NGSpipeline. The scripts are written in Python, julia, and HyPhy batch language.
Installing Julia modules
One of the scripts