Resources# Tutorials for using HyPhy to infer selection with various methods. Detailed descriptions of these methods are available here. Book chapters and Powerpoints detailing HyPhy usage: Quantifying Natural Selection in Coding Sequences (2016) HyPhy Book: Estimating selection pressures on alignments of coding sequences (2007) Introduction: Compartmentalization Detection Getting help See the current Github Issues page for posting questions or searching queries from other users. The retired (as of 2014) user forum is also available for viewing here. You can also tweet us at @hyphy_software with quick questions.